kidzik/other-public-mcps

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A collection of Model Context Protocol (MCP) servers for biomedical research, providing AI assistants with access to various biomedical databases and resources.
## What is MCP?
The Model Context Protocol (MCP) allows AI assistants like Claude to access external tools and data sources. These servers extend Claude's capabilities by providing access to specific biomedical databases.
## Available Servers
This repository contains the following MCP servers:
### PubMed MCP Server
Access the PubMed database of biomedical literature.
Search PubMed for articles matching a query
Retrieve abstracts for specific articles
Find related articles based on a PMID
Search for articles by a specific author
### BioRxiv/MedRxiv MCP Server
Access preprints from bioRxiv and medRxiv repositories.
Get detailed information about preprints by DOI
Find published versions of preprints
Search for recent preprints
Search preprints by date range and category
### ClinicalTrials.gov MCP Server
Access information about clinical trials.
Search for trials matching specific criteria
Get detailed information about specific trials
Find trials by medical condition
Find trials by location
### DrugBank MCP Server
Access drug information from DrugBank.
Search for drugs by name
Get detailed information about specific drugs
Find drugs by indication
Find drugs by category
Get drug interaction information
### OpenTargets MCP Server
Access drug target information from Open Targets.
Search for gene targets
Get detailed target information
Search for diseases
Find disease-target associations
Search for drugs
## Setup
1. Install dependencies for all servers:
pip install -r requirements.txt
2. For specific servers, additional setup may be required:
For PubMed: Update the EMAIL constant in pubmedmcp.py with your email address (required by NCBI)
For DrugBank: Add your DrugBank API key to the APIKEY constant in drugbankmcp.py
3. Run a server:
python pubmedmcp.py # Replace with the server you want to run
## Connecting to Claude for Desktop
To use these servers with Claude for Desktop:
1. Make sure you have the latest version of Claude for Desktop installed.
2. Edit your Claude for Desktop configuration file located at:
macOS: ~/Library/Application Support/Claude/claudedesktopconfig.json
Windows: %AppData%\Claude\claudedesktopconfig.json
3. Add server configurations:
json
"mcpServers": {
"pubmed-mcp": {
"command": "python",
"args": [
"/ABSOLUTE/PATH/TO/pubmedmcp.py"
},
"biorxiv-mcp": {
"command": "python",
"args": [
"/ABSOLUTE/PATH/TO/bioarxivmcp.py"
},
"clinicaltrials-mcp": {
"command": "python",
"args": [
"/ABSOLUTE/PATH/TO/clinicaltrialsgovmcp.py"